Deteksi Bakteri Endofit Dan Pengaruh Microbacterium arborescens Terhadap Pertumbuhan Sorgum Manis (Sorghum bicolor)

Riana Nindita Putri*    -  Universitas Gadjah Mada Yogyakarta, Indonesia

(*) Corresponding Author
This research aims to detect the presence of potential endophytic bacteria, one of which is Microbacterium arborescens and study the effects on the growth of local variants of sweet sorghum plants from farmers in Sleman, Yogyakarta. This research began with infection of Microbacterium arborescens bacteria on sorghum seeds. Sorghum plants were grown in sterile media for 14 days after germination to observe seven growth parameters, including root length, number of lateral roots, stem length, number of leaves, leaf length, wet weight, and dry weight. Analysis of sweet sorghum growth parameters based on the one way ANOVA statistical test. Samples of infected and uninfected sorghum plants in the roots, stems, and leaves were amplified for the 16s rRNA gene using Bioline PCR hotstart mix. The primers used are universal primer Primer 27 f (59-AGA GTT TGA TCM TGG CTC AG-39) and 1492 r (59- TAC GGH TAC CTT GTT ACG ACT T-39). The root length and number of lateral roots between sweet sorghum with and without Microbacterium arborescens infection showed significant differences. The length of the control roots was 9.24 cm, the treatment plants were 6.38 cm, the control plants had six treatment roots, and the treatment plants had ten lateral roots.

Keywords: sweet sorghum, Microbacterium arborescens, 16s rRNA gene, growth-promoting bacteria

  1. Ausubel, F. M. R. Brent, R.E Kingston, D. D. Moore, J, G. Seidman, J.A. Smith, K. Struhl. 1995. Short Protocol in Molecular Biology. 3rd edition. John Wiley & Sons Inc. California, USA
  2. Schluezen, F. A. Tocilij, R. Zarivach, J. Harms, M. Gluehmann, D. Janell , A. Bashan, H. Bartels, I. Agmon, F. Franceschi & A. Yonath. 2000. Structure of functionally activated small ribosomal subunit at 3.3 resolution. Cell. 102(5): 615-623
  3. De Fretes., C. Ria, S. Yekti, A. P. Tri, N. N. Donny, W. 2018. Diversity of Endophytic Bacteria in Sweet Sorghum (Sorghum bicolor (L.) Moench) and their Potential for Promoting Plant Growth. Indian Journal of Science and Technology. 11(11)
  4. Duca D, Lorv J, Patten CL, Rose D, Glick BR. 2014. Indole-3-acetic acid in plant-microbe Interactions. Antonie Van Leeuwenhoek. 106(1):85–125 enhancing crop productivity. Trends Biotechnol. 7:39-43.
  5. Fan, B., Chen, X. H., Budiharjo, A., Bleiss, W., Vater, J., and Borriss, R. 2011. Efficient colonization of plant roots by the plant growth promoting bacterium Bacillus amyloliquefaciens FZB42, engineered to express green fluorescent protein. Journal of Biotechnology, 151(4), 303–311.
  6. Govindasamy, V., Raina, S.K., George, P. 2017. Functional and phylogenetic diversity of cultivable rhizobacterial endophytes of sorghum [Sorghum bicolor (L.) Moench]. Antonie van Leeuwenhoek. 110: 925.
  7. Gutirrez-Lucas, L.R., J.J. Montor-Antonio, and N.M. Cortez-Lopez. 2014. Strategies for extraction, purification and amplification of metagenomic DNA from soil growing sugarcane. Advances in Biological Chemistry. 4 : 81-289
  8. Kartahadimaja, J., R.Wentasari., dan R.N.Sesanti. 2010. Pertumbuhan dan produksi Polong Segar Edamame Varietas Rioko pada Empat jenis Pupuk. Agrovigor Volume 3 No. 2. ISSN 1979-5777.
  9. Liu, F. C., Xing, S. J., Ma, H. L., Du, Z. Y., & Ma, B. Y. 2013. Plant growth-promoting rhizobacteria affect the growth and utrient uptake of Fraxinus americana container seedlings. Current Opinion in Biotechnol 14:303–310
  10. Rashid, S., Charles, T. C., and Glick, B. R. 2012. Isolation and characterization of new plant growth-promoting bacterial endophytes. Applied Soil Ecology, 61: 217–224
  11. Sambrook J, Russel DW. 2001. Molecular Cloning: A Laboratory Manual, Third Edition. New York: Cold-Spring Harbor Laboratory Pr.
  12. Suryani, R. 2016. Isolasi dan Keanekaragaman Bakteri Endofit Sorgum Manis [(Sorghum bicolor (L.) Moench.]. Thesis. Fakultas Biologi, Universitas Gadjah Mada, Yogyakarta.
  13. Santhanam,R. Van T.L, Arne W., Jay G., Youngjoo O., Ian T.B. 2015. Native root-associated bacteria rescue a plant from a sudden-wilt disease that emerged during continuous cropping. PNAS: 112 (36)
  14. Osborne CA, Galic M, Sangwan P, Janssen PH. 2005. PCR-generated artifact from 16S rRNA gene-specific primers. FEMS Microbiol Lett 248:183–187
  15. Mao, DP., Q. Zhou, C. Y. Chen and Z. X. Quan. 2012. Coverage Evaluation Of Universal Bacterial Primers Using The Metagenomic Datasets. BMC Microbiology. 12:66.
  16. Fajardo, V., Gonzales, I., Martin, I., Rojas, M., Hernandez, P.E., Garcia, T. dkk., 2010. A review of current PCR-based methodologies for autentification of meats from game animal species. Trends in Food Science and Technologies. 21, 408-421
  17. Huang , X. F., J.M. Chaparro, K. F. Reardon, R. Zhang, Q. Shen, J. M. Vivaco. 2014. Rhizosphere interaction : root exudates, microbes, and microbial communities. Botany 92: 267-275
  18. Larsen, J., P. j, Lopez, M.N . Rincon, C. E. G. Esquivel. 2015. Biotic interactions in the rhizosphere in relation to plant and soil nutrient dynamics. Journal of Soil Science and Plant Nutrition 15: 449-463
  19. Monteiro, R. A., Schmidt, M. A., de Baura, V. A., Balsanelli, E., Wassem, R., and Yates, M. G. 2008. Early colonization pattern of maize (Zea mays L. Poales, Poaceae) roots by Herbaspirillum seropedicae (Burkholderiales, Oxalobacteraceae). Genetics and Molecular Biology, 31(4), 932–937
  20. Tilak KVBR, Ranganayaki N, Pal KK, De R, Saxena AK, Nautiyal CS, Mittal S, Tripathi AK, Johri BN. 2005. Diversity of plant growth and soil health supporting bacteria. Curr Sci. 89:136-150.
  21. Zulkarnaen, Irmansyah T, Irsal. 2015.Respon pertumbuhan dan produksi beberapa varietas sorgum (Sorghum bicolor (L.) Moench) pada berbagai jarak tanam di lahan kelapa sawit TBM I. J. Online Agroteknologi 3 (1) : 328 – 339.
  22. Lavecchia, A. M. Curci, K. Jangid, W. B. Whitman, P. Ricciuti, S. Pascazio, C. Crecchio. 2015. Microbial 16S gene-based composition of a sorghum cropped rhizosphere soil under different fertilization managements. Biology and fertility of Soils. 51 : 661-672
  23. Janda, J. M and Abbott. 2007. 16s rRNA gene sequencing for bacterial identification in diagnostic laboratory : Plues, perils, amd Pitfals. Journal of Clinical Microbiology. 55 : 9
  24. Fakruddin, Mannan KS. 2013. Methods for analyzing diversity of microbial communities in natural environments. Ceylon J Sci. 42(1):19-33.
  25. Dewi, A. R. 2016. Optimalisasi Metode Ekstraksi dan Purifikasi DNA Mikrobia dari Tanah Budidaya Sorghum Manis (Sorghum bicolor (L.) Moench). Skripsi. Program Sarjana Universitas Gadjah Mada. Yogyakarta

Open Access Copyright (c) 2023 Al-Hayat: Journal of Biology and Applied Biology
Creative Commons License
This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.
apps