Bioactivity mapping of secondary metabolite compounds of Pandanus amaryllifolius leaves as anti-inflammatory using in silico

Robiatus Sholichah Arrohmah  -  Universitas Islam Negeri Sunan Ampel Surabaya, Indonesia
Afina Anjani Ibtisam*  -  Universitas Islam Negeri Sunan Ampel Surabaya, Indonesia
Siti Malihatus Sa’adah  -  Universitas Islam Negeri Sunan Ampel Surabaya, Indonesia
Fensy Rania Putri  -  Universitas Islam Negeri Sunan Ampel Surabaya, Indonesia
Fitriyah Fitriyah  -  Universitas Islam Negeri Maulana Malik Ibrahim Malang, Indonesia

(*) Corresponding Author

Inflammation is one of the primary responses of the immune system to infection and irritation. Anti-inflammatory drugs generally cause side effects. Anti-inflammatory developed by reducing side effects use many natural materials such as plants. The parts of the plant used include fruits, leaves, stem bark, rhizomes, and flowers. One of the plants that can be used as an anti-inflammatory is Pandanus amaryllifolius. P. amaryllifolius leaves contain several materials, such as flavonoids, alkaloids, saponins, tannins, polyphenols, and dyes. This study aimed to determine the anti-inflammatory potential of the secondary metabolites of Pandanus amaryllifolius leaves using the in silico method. The research used a descriptive exploratory method and was conducted from December 2022 – January 2023. In silico mapping of the bioactivity of active compounds was carried out using several software or websites: knapsack database (www.knapsackfamily.com), NCBI PubChem database (https://pubchem.ncbi.nlm.nih.gov/), PASS Online Way 2 Drug (http://www.way2drug.com/passonline/) and ADME Swiss Analysis (http://www.swissadme.ch/). The result shows P. amarylifolius has 31 active compounds. The compounds were then analyzed using Pass Online with 18 anti-inflammatory parameters. It explained that 3 compounds met the rules for Pa values > 0.7, namely compounds 6E-Pandanamine (0.758), Pandamenyamine (0.735), and Pandamarilactone 1 (0.709). The results of pharmacokinetic tests using Lipinski

Keywords: Antiinflamasi Pandanus; In silico.

  1. Bhatt, V. et al. (2021) ‘Fragrance in pandanus amaryllifoliusroxb. Despite the presence of a betaine aldehyde dehydrogenase 2’, International Journal of Molecular Sciences, 22(13), pp. 1–18. doi: 10.3390/ijms22136968.
  2. Cheng, Y. Bin et al. (2017) ‘Isolation and absolute configuration determination of alkaloids from Pandanus amaryllifolius’, Tetrahedron. Elsevier Ltd, 73(25), pp. 3423–3429. doi: 10.1016/j.tet.2017.05.002.
  3. Cing, J. M., Hami Seno, D. S. and Santoso, T. J. (2015) ‘Identification of Aroma Gene (Mutated badh2) and Properties of Aroma on Aromatic BC5F2 Ciherang’, Current Biochemistry, 2(1), pp. 42–51. doi: 10.29244/cb.2.1.42-51.
  4. Greger, H. et al. (2009) ‘Pandanus alkaloids in stemonaceae: Finding of a plausible biogenetic origin of Stemona alkaloids’, Journal of Natural Products, 72(9), pp. 1708–1711. doi: 10.1021/np900294c.
  5. Laluces, H. M. C. et al. (2015) ‘Antimicrobial alkaloids from the leaves of Pandanus amaryllifolius’, Journal of Applied Pharmaceutical Science, 5(10), pp. 151–153. doi: 10.7324/JAPS.2015.501026.
  6. Lopez, D. C. and Nonato, M. G. (2005) ‘Alkaloid from Pandanus Amaryllifolius Collected from Marikina , Philippines’, Philippine Journal of Science, 134(June), pp. 39–44.
  7. Mardiyaningsih, A. and Aini, R. (2014) ‘PENGEMBANGAN POTENSI EKSTRAK DAUN PANDAN (Pandanus amaryllifolius Roxb) SEBAGAI AGEN ANTIBAKTERI’, Pharmaciana, 4(2), pp. 185–192. doi: 10.12928/pharmaciana.v4i2.1577.
  8. Marina, R. et al. (2012) ‘Potensi Daun Pandan (Pandanus Amaryllifolius) Dan Mangkokan (Notophanax scutellarium) Sebagai Repelen Nyamuk Aedes Albopictus Potency of Pandanus amaryllifolius and Notophanax scutellarium as Aedes albopictus Mosquito Repellent’, Aspirator, 4(2), pp. 85–91.
  9. Mataliana, G. N. A., Yudhari, I. D. A. S. and Dewi, I. A. L. (2015) ‘Keragaan usahatani pandan wangi (Pandanus amaryllifolius roxb) di subak tegenungan desa kemenuh kecamatan sukawati kabupaten gianyar’, The Journal of Agribusiness and Agritourism, 4(1), pp. 1–9.
  10. Novian, D. R., Ikhwani, A. Z. N. and Winarso, A. (2019) ‘Uji Farmakodinamik, Drug-Likeness, Farmakokinetik dan Interaksi Senyawa Aktif Kayu Ular (Strychnos lucida) sebagai Inhibitor Plasmodium falciparum Secara In Silico’, Jurnal Veteriner Nusantara, 2(1), pp. 70–78.
  11. Nusantoro, Y. R. and Fadlan, A. (2020) ‘Analisis Sifat Mirip Obat, Prediksi ADMET, dan Penambatan Molekular Isatinil-2-Aminobenzoilhidrazon dan kompleks logam transisi Co(II), Ni(II), Cu(II), Zn(II) Terhadap BCL2-XL’, Akta Kimia Indonesia, 5(2), p. 114. doi: 10.12962/j25493736.v5i2.7881.
  12. Pramely, R. and Raj, T. L. S. (2012) ‘Prediction of biological activity spectra of a few phytoconstituents of Azadirachta indicia A . Juss’, Journal of Biochemistry and Techniques, 3(4), pp. 375–379.
  13. Putra, P. P., Fauzana, A. and Lucida, H. (2020) ‘Analisis Sifat Fisika-Kimia, Potensi Target dan Toksikologi Senyawa Isolat Murni dari Bahan Alam dengan Metode In Silico’, Indonesian Journal of Pharmaceutical Science and Technology Journal Homepage, 7(3), pp. 107–117.
  14. Rachmawan, A. and Dalimunthe, C. I. (2017) ‘Prospek Pemanfaatan Metabolit Sekunder Tumbuhan Sebagai Pestisida Nabati Untuk Pengendalian Patogen Pada Tanaman Karet’, Warta Perkaretan, 36(1), pp. 15–28. doi: 10.22302/ppk.wp.v36i1.324.
  15. Ramadhani, N. and Sumiwi, S. A. (2016) ‘Aktivitas antiinflamasi berbagai tanaman diduga berasal dari flavonoid’, Farmaka, 14(2), pp. 111–123.
  16. Routray, W. and Rayaguru, K. (2010) ‘Chemical constituents and post-harvest prospects of Pandanus amaryllifolius leaves: A review’, Food Reviews International, 26(3), pp. 230–245. doi: 10.1080/87559129.2010.484114.
  17. Salim, A. A., Garson, M. J. and Craik, D. J. (2004) ‘New Alkaloids from Pandanus amaryllifolius’, Journal of Natural Products, 67(1), pp. 54–57. doi: 10.1021/np0303310.
  18. Sari, D. R. T., Krisnamurti, G. C. and Bare, Y. (2022) ‘Virtual Mapping of Secondary Metabolite Activities Containing in Caesalpinia sappan L. Heartwood through In Silico Study’, Journal Pharmasci (Journal of Pharmacy and Science), 7(1), pp. 21–28. doi: 10.53342/pharmasci.v7i1.274.
  19. Sentat, T. (2016) ‘Uji Aktivitas Anti Inflamasi Ekstrak Etanol Daun Pandan Wangi (Pandanus amaryllifolius Roxb.) Pada Mencit Putih Jantan (Mus Musculus)’, Seminar Nasional 2016 Akademi Farmasi Samarinda, pp. 1–11.
  20. Sirait, V. V. and Novianty, R. (2022) ‘Analisis Studi in Silico Senyawa Guineensine Sebagai Kandidat Obat Antidepresan’, pp. 1–12.
  21. Tan, M. A. et al. (2010) ‘Isolation of pandamarilactonine-H from the roots of Pandanus amaryllifolius and synthesis of epi -pandamarilactonine-H’, Journal of Natural Products, 73(8), pp. 1453–1455. doi: 10.1021/np1003998.
  22. Tsai, Y. C. et al. (2015) ‘Alkaloids from Pandanus amaryllifolius: Isolation and Their Plausible Biosynthetic Formation’, Journal of Natural Products, 78(10), pp. 2346–2354. doi: 10.1021/acs.jnatprod.5b00252.
  23. Yadav, M. B., Pandhade, K. R. and Argade, N. P. (2020) ‘Chemoselective Ring Closure of 4-(3-Methyl-2-oxo-2,5-dihydro-1 H-pyrrol-1-yl)butanal Leading to Pandalizine A’, ACS Omega, 5(1), pp. 859–863. doi: 10.1021/acsomega.9b03760.

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